To understand innovation requires getting a handle on the processes that translate investments into desired outcomes, which inevitably is much more complicated than any pipeline.
The first study is from McKinsey (PDF) and is on the role of the internet in the global economy. The report has some fascinating data on the role of the internet in 13 different countries around the world, but its most important contribution is its assessment of those factors that contribute to economic growth via the internet. Among these are human capital, infrastructure, a favorable business environment and financial capital. Governments have a role to play in each of these areas.
The second study comes from a group called United for Medical Research (PDF) and is focused on evaluating the economic consequences of government spending through the National Institutes of Health. This study is much more a "pipeline" study with a focus on funding to NIH and various correlates of economic consequences with only a bit of hand-waving at mechanisms of innovation.
The third report comes from Batelle (PDF) and is focused on the economic and functional consequences of the Human Genome Project. While the report has much valuable information about technologies, processes and outcomes related to the HGP, it is thin (remarkably so) on the public and private context which enabled such outcomes, lending itself to a "pipeline" interpretation.
It seems to me that the McKinsey report is far more focused on providing information that might be useful in thinking about innovation policies, whereas the UMR and Batelle studies seem aimed at providing simple justifications for more federal funding for R&D. Innovation policies however are far more than money spent on R&D.